alcantarar/BiomchBERT

Repository for BiomchBERT, the neural network classifying papers for the weekly Biomch-L Literature Update

BiomchBERT

Using Google's BERT neural network to categorize biomechanics publications

BiomchBERT has a prediction accuracy of 72% across 27 categories (tested on 1,600 publications)

Read about how BiomchBERT is helping the Biomechanics community! Source code for BiomchBERT can be found here. Weekly Literature Updates are posted here. BiomchBERT (1.1 GB) and the training data is archived at Zenodo due to GitHub file size limitations.

Major Dependencies

• BERT trained on MEDLINE/PubMed
• Tensorflow
• Biopython
• BeautifulSoup

Contributors

• Ryan Alcantara (twitter // website // github)
• Gary Bruening (twitter // website // github)

Read about the early attempt to automate the Biomch-L Literature Update here.

You can support this and my other projects by clicking the "sponsor" button on the sidebar!