aldertzomer
Associate Professor at Utrecht University, Department of Infectious Diseases & Immunology. (meta)genomes, AMR, zoonotic bugs.
Utrecht UniversityUtrecht
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
cgmlst
Fork of mlst of tseemann modified for cgmlst. Not very fast when used with organisms with a large number of allelic variants
cloud-genomics
Introduction to Cloud Computing for Genomics
essentials
Software for rapid analysis of transposon insertion sequencing data
FastDeMe
A fast, easy solution for metagenomic data analysis - Forked from Sander Vermeulens repository, developed during his internship
Microbial-Genomics-2022
https://aldertzomer.github.io/Microbial-Genomics-2022/ Day 4 and 5 of the Microbial Genomics course 2022
MolecularEpidemiology_AnalysisWGS
ResistNanome
A pipeline to extract microbiome and resistome profiles from Nanopore data from the internship of https://github.com/AStieva/
RFPlasmid
Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
vibrio_parahaemolyticus_genomoserotyping
Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus
aldertzomer's Repositories
aldertzomer/RFPlasmid
Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
aldertzomer/vibrio_parahaemolyticus_genomoserotyping
Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus
aldertzomer/FastDeMe
A fast, easy solution for metagenomic data analysis - Forked from Sander Vermeulens repository, developed during his internship
aldertzomer/Microbial-Genomics-2022
https://aldertzomer.github.io/Microbial-Genomics-2022/ Day 4 and 5 of the Microbial Genomics course 2022
aldertzomer/cgmlst
Fork of mlst of tseemann modified for cgmlst. Not very fast when used with organisms with a large number of allelic variants
aldertzomer/ResistNanome
A pipeline to extract microbiome and resistome profiles from Nanopore data from the internship of https://github.com/AStieva/
aldertzomer/bioconda-recipes
Conda recipes for the bioconda channel.
aldertzomer/cloud-genomics
Introduction to Cloud Computing for Genomics
aldertzomer/essentials
Software for rapid analysis of transposon insertion sequencing data
aldertzomer/genomics-workshop
Genomics Workshop Overview
aldertzomer/MolecularEpidemiology_AnalysisWGS
aldertzomer/Microbial-Genomics-2018
aldertzomer/Microbial-Genomics-2019
aldertzomer/organization-genomics
Project Organization and Management for Genomics
aldertzomer/scripts
Bash scripts that may be useful to others
aldertzomer/shell-genomics
Introduction to the Command Line for Genomics
aldertzomer/structuralcolor
Predicting structural color from genome sequences.
aldertzomer/structuralcolour
Predicting structural colour from genome sequences.
aldertzomer/wrangling-genomics
Data Wrangling and Processing for Genomics