alecorr

alecorr's Stars

• Genentech/scimilarity

  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

  Language:Python841

• kharchenkolab/numbat

  Haplotype-aware CNV analysis from single-cell RNA-seq

  Language:R16323

• aertslab/SCENIC

  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

  Language:HTML40994

• aertslab/ScoMAP

  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.

  Language:R254

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python417178