alek0991/iSAFE

Issues

• Error when running iSAFE using haps converted using plink2

  #19 opened 8 months ago by itsmestewart
  3

• Runtimes, memory given sample size, # variants

  #18 opened 2 years ago by sdtemple
  4

• Providing some help for bcftools issue

  #17 opened 2 years ago by sdtemple
  0

• Reccomended parameter settings for whole chromosome of genotype-density data

  #16 opened 3 years ago by sahwa
  1

• Fix typo

  #15 opened 3 years ago by alek0991
  0

• Fix Typo

  #14 opened 3 years ago by alek0991
  1

• EmptyDataError while load_vcf_as_df

  #13 opened 3 years ago by L-of-IOS
  2

• Multiple iSAFE peaks

  #9 opened 3 years ago by psytky03
  3

• PYsam is required but not mentioned

  #12 opened 3 years ago by L-of-IOS
  1

• Different number of analysed sites with and without ancestral sequence

  #8 opened 3 years ago by andreyurch
  1

• total_variant_count smaller than window size?

  #7 opened 4 years ago by lauterbur
  2

• 'DataFrame' object has no attribute 'sort_values'

  #1 opened 7 years ago by SC-Duan
  1

• using iSAFE without an ancestral allele file

  #4 opened 4 years ago by js4u13
  2

• threshold value for selection

  #3 opened 5 years ago by xinkwu
  9

• Genome-wide analysis using iSAFE

  #6 opened 4 years ago by andreyurch
  2

• Functional effect whereby hap input "assumes... the selection is ongoing"?

  #2 opened 5 years ago by lauterbur
  3

• sample IDs in VCF

  #5 opened 4 years ago by psytky03
  1