/trainset19

Provides the RDP trainset19 16S rRNA Sequence Reference

Primary LanguageROtherNOASSERTION

trainset19

A data package that provides users of the {phylotypr} package with the reference data needed to classify 16S rRNA gene sequences using the RDP’s trainset19 taxonomy reference. The data were originally posted by the RDP and reformatted for use with mothur. Both the “rdp” and “pds” versions of the trainset19 reference data are available as trainset19_rdp and trainset19_pds, respectively.

Installation

You can install the development version of trainset19 from GitHub with:

# install.packages("devtools")
devtools::install_github("mothur/trainset19")

Example

Here is a profile of the trainset19_rdp and trainset19_pds reference data:

library(trainset19)
dim(trainset19_rdp)
#> [1] 24642     3
dim(trainset19_pds)
#> [1] 24762     3