alephpiece/docker-hdf5

Dockerfiles for building HDF5 with GCC for application development

Supported tags

• 1.10.5-gompi, 1.10.5-gompi-4.0.0, 1.10.5-gompi-3.1.5
• 1.10.5-gcc, 1.10.5-gcc-9.2.0, 1.10.5-gcc-8.3.0, 1.10.5-gcc-7.3.0
• 1.10.5-clang

How to use

1. Install docker engine

2. Pull the image

docker pull leavesask/hdf5:<tag>

3. Run the image interactively

docker run -it --rm leavesask/hdf5:<tag>

How to build

make

There are a bunch of build-time arguments you can use to build the image.

It is hightly recommended that you build the image with make.

# Build an image for HDF5 1.10.5
make

# Build and publish the image
make release

Check Makefile for more options.

docker build

As an alternative, you can build the image with docker build command.

docker build \
        --build-arg BASE_IMAGE="leavesask/gcc" \
        --build-arg BASE_TAG="latest" \
        --build-arg HDF5_VMAJOR="1.10" \
        --build-arg HDF5_VMINOR="5" \
        --build-arg HDF5_CC="gcc" \
        --build-arg HDF5_CXX="g++" \
        --build-arg HDF5_OPTIONS="--enable-cxx" \
        --build-arg BUILD_DATE=`date -u +"%Y-%m-%dT%H:%M:%SZ"` \
        --build-arg VCS_REF=`git rev-parse --short HEAD` \
        -t my-repo/hdf5:latest .

Arguments and their defaults are listed below.

• BASE_IMAGE: value (default=leavesask/gompi)

  • This is the base image for all of the stages.
  • It is supposed to be a toolchain containing compilers.

• BASE_TAG: value (default=latest)

• HDF5_VMAJOR: X.X (default=1.10)

• HDF5_VMINOR: X (default=5)

• HDF5_CC: value (default=mpicc)

• HDF5_CXX: value (default=mpicxx)

• HDF5_OPTIONS: option[=value] (default=--enable-cxx --enable-parallel --enable-unsupported)

  • Options needed to configure the installation.
  • The default installation path is /opt/hdf5/${HDF5_VERSION} so that option --prefix is unnecessary.

• USER_NAME: value (default=one)

  • This must be an existing user in the base image.