alessiavalenti
PhD student in Computational Biology at SEMM in Prof. Giuseppe Testa group, Human Technopole
Human TechnopoleMilan
alessiavalenti's Stars
GSK-AI/image2omics
Accompanying code for Image2Omics
omgenomics/bio-data-zoo
Example genomics data for tool developers
haesleinhuepf/stackview
Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
MarioniLab/oor_benchmark
A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
scverse/pertpy
Perturbation Analysis in the scverse ecosystem.
pachterlab/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
jian-shu-lab/Bering
znstrider/plottable
most pretty & lovely tables with matplotlib
stasaki/clei2block
Deep-neural protein translation
theislab/scarches
Reference mapping for single-cell genomics
QSong-github/SiGra
Single-cell spatial elucidation through image-augmented graph transformer
andreabassi78/napari_workshop_milan
We will upload here the material and the code of the napari workshop held in Milano on Sept 26-27th 2023
Suor/funcy
A fancy and practical functional tools
scverse/spatialdata-plot
Static plotting for spatialdata
Teichlab/celltypist
A tool for semi-automatic cell type classification
theislab/zellkonverter
Conversion between scRNA-seq objects
dosisod/refurb
A tool for refurbishing and modernizing Python codebases
huggingface/accelerate-wip
🚀 A simple way to train and use PyTorch models with multi-GPU, TPU, mixed-precision
Hedlen/awesome-segment-anything
Tracking and collecting papers/projects/others related to Segment Anything.
RMS-DAIM/Python-for-Bioimage-Analysis
This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
hannekeo/WhISCR
An analysis pipeline in CellProfiler and R for analysis of Whole-slide immunofluorescence image data
multitalk/awesome-cell-cell-communication
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
CellProfiler/distribution
Everything needed to build CellProfiler for your favorite environment.
Novartis/scar
scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
royerlab/napari-segment-anything
Segment Anything Model (SAM) native Qt UI
chunglabmit/scout
Multiscale hyperdimensional phentypic analysis of organoids
JiekaiLab/scTE
scverse/scvi-tutorials
Notebooks used in scvi-tools tutorials
mortennobel/cpp-cheatsheet
Modern C++ Cheatsheet
JanPalasek/pretty-jupyter
Creates dynamic html report from jupyter notebook.