Comparison of metabolomic and metagenomic data from piglets treated with or without Colistin (antibiotic) during their first 7-days of living.
Processing and treatment of holopig data in order to :
- Analyse the taxonomy abundance of the microbiota
- Analyse the function abundance of the microbiota
- Study the correlations between the bacterial abundance and the metabolite's abundance
- Identify bacteria expressing genes involved in metabolite production
This project is divided in different folders :
- export :
Where are outputed the figures - notebooks :
Where scripts are deeply commented and the aproach is explained - raw_data :
Where the raw data needs to be imported - refined_data :
Where are outputed new data frames made by using the raw data - ressources :
Where are files used as databases - scripts :
Where R scripts are stored