alexQiSong

alexQiSong.github.io

My personal blog. Please visit https://alexqisong.github.io/

Basic-algorithms-implementation-using-python

cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

ConSReg

Condition Specific Regulatory Network Analysis

CoReg

CSHMM-for-time-series-scRNA-Seq

This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data

HuBNet

The web app for the query and visualization of predictions made by MTLRANK framework

MTLRank

MTLRank is a multi-task learning based framework for inferring regulatory interactions from single cell data

scSTEM

Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq data. scSTEM is a GUI based tool and thus does not require any coding experience.

scSTEM_sample_data

This repository includes sample data for scSTEM

alexQiSong/scSTEM

Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq data. scSTEM is a GUI based tool and thus does not require any coding experience.

alexQiSong/MTLRank

MTLRank is a multi-task learning based framework for inferring regulatory interactions from single cell data

alexQiSong/scSTEM_sample_data

This repository includes sample data for scSTEM

alexQiSong/alexQiSong.github.io

My personal blog. Please visit https://alexqisong.github.io/

alexQiSong/Basic-algorithms-implementation-using-python

alexQiSong/cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

alexQiSong/ConSReg

Condition Specific Regulatory Network Analysis

alexQiSong/CoReg

alexQiSong/CSHMM-for-time-series-scRNA-Seq

This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data

alexQiSong/HuBNet

The web app for the query and visualization of predictions made by MTLRANK framework

alexQiSong/jekyll-multilingual

Minimal example of a multilingual Jekyll website

alexQiSong/LincRNA_MIMB

Analysis srcipts for a book chapter

alexQiSong/lung_aging_analysis

This repository demonstrates analyses presented in the manuscript

alexQiSong/machine-learning-python-implementation

My own implementation of machine learning algorithm in python

alexQiSong/minimal-mistakes

:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.

alexQiSong/netZooC

NetZooC is a package of network methods written in C.

alexQiSong/netZooPy

NetZooPy is a package of network methods written in Python.

alexQiSong/numerical_optimization

alexQiSong/polyEN

This repository includes python functions for polyEN pipeline. Please use polyEN.py to perform model training and testing for age prediction.

alexQiSong/scSTEM-STEM-java

STEM java program called by scSTEM

alexQiSong/scvelo

RNA Velocity generalized through dynamical modeling

alexQiSong/TNRDMTL

[Code] Trace Norm Regularised Deep Multi-Task Learning