alexcarisey

alexcarisey's Stars

• kirtiprakash/lfsm_latex_template

  Language:TeX2

• BIOP/ijp-LaRoMe

  some useful function to get Label from ROIs and vice versa , and more!

  Language:Java124

• HarisIqbal88/PlotNeuralNet

  Latex code for making neural networks diagrams

  Language:TeX21.9k2.9k

• clEsperanto/i2k2020_tutorial_clij_clesperanto

  Language:Jupyter Notebook124

• ariel-waisman/LabelsToROIs

  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

  Language:Python219

• clauswilke/colorblindr

  An R package to simulate colorblindness on R figures.

  Language:R30629

• univrsal/spectralizer

  Audio visualizer plugin for obs-studio

  Language:C++58958

• univrsal/input-overlay

  Show keyboard, gamepad and mouse input on stream

  Language:C++2.9k245

• openUC2/UC2-GIT

  Respository for Open-Science modular microscope system.

  Language:Jupyter Notebook44268

• IBM/MicroscoPy

  An open-source, motorized, and modular microscope built using LEGO bricks, Arduino, Raspberry Pi and 3D printing.

  Language:Python1.2k114

• superresolusian/NEUBIAS-webinar

  Resources for part 1 of the NEUBIAS@home webinar on SMLM analysis

  93

• AiviaCommunity/PythonForAivia

  Python scripts library for Aivia. Ask your questions on the forum >>

  Language:Python153

• jries/SMAP

  Language:MATLAB6320

• qupath/qupath

  QuPath - Bioimage analysis & digital pathology

  Language:Java1k278

• PRNicovich/SerialMultiplexer

  Liquid handling robot for in situ serial multiplexing

  Language:Objective-C182

• menchelab/hci-immune-synapse

  Companion repository for the article "Morphological profiling of human T and NK lymphocytes identifies actin-mediated control of the immunological synapse"

  Language:Jupyter Notebook21

• lowe-lab-ucl/unet_segmentation_metrics

  Metrics for determining segmentation accuracy

  Language:Jupyter Notebook3710

• constantinpape/cluster_tools

  Distributed segmentation for bio-image-analysis

  Language:Python3514

• ries-lab/LaserEngine

  Blueprints for a low-cost laser combiner compatible with wide-field and localization microscopy.

  Language:HTML528

• vanvalenlab/deepcell-tf

  Deep Learning Library for Single Cell Analysis

  Language:Python41395

• BPHO-Salk/PSSR

  Deep Learning-Based Point-Scanning Super-Resolution (PSSR)

  Language:Python8129

• Image-Py/imagepy

  Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

  Language:Python1.3k333

• churchmanlab/genewalk

  GeneWalk identifies relevant gene functions for a biological context using network representation learning

  Language:Python12815

• ccsb-scripps/Illustrate

  Biomolecular Illustration Tool

  Language:Fortran10821

• tlambert03/mrc

  Read and write .mrc and .dv (deltavision) image file format.

  Language:Python81

• samuelmehr/labhandbooks

  Information about what kinds of things people put in lab handbooks.

  7911

• BugajLab/optoPlate-96

  All design files and scripts necessary for the construction and use of the optoPlate-96

  Language:C++113

• yinhaoz/denoising-fluorescence

  CVPR 2019: Fluorescence Microscopy Denoising (FMD) dataset

  Language:Python12015

• JoachimGoedhart/Quantify-Intensity-from-Timelapse

  Step-by-step instruction to quantify fluorescence intensities from timelapse imaging experiments

  8

• fjmrt/NeuralNet_onImageJ

  handwriting number recognition on ImageJ

  Language:Python4