alexcarisey
CMB/CPNDR Microscopy core director Cell & Molecular Biology Department St. Jude Children's Research Hospital
St. Jude Children's Research HospitalMemphis, TN
alexcarisey's Stars
NICALab/SUPPORT
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
ScaDS/BIDS-lecture-2024
Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024
HohlbeinLab/prj-thunderstorm
ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
napari/cookiecutter-napari-plugin
Cookiecutter for napari plugins
guiwitz/napari-skimage
A minimal dependency napari plugin giving access to scikit-image functions
kreshuklab/go-nuclear
Guides and code for 3D nuclear instance segmentation
MouseLand/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Lakens/statistical_inferences
Repository for the textbook 'Improving Your Statistical Inferences' by Daniel Lakens
oanegros/MicroscopyNodes
Loading and handling microscopy data in blender
pr4deepr/GutAnalysisToolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
CellMigrationLab/CellTracksColab
A platform for compiling, analyzing, and exploring tracking data
mutterer/RML
AlexHego/Cellpose_TrackMate_LiveCell
haesleinhuepf/napari-assistant
oanegros/Blender_for_Biologists_2023
royerlab/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
MartinHjelmare/leicacam
Control Leica microscopes with python
ZEISS/czicheck
Checking CZI Documents
burghoff/Scientific-Inkscape
Scientific Inkscape: Inkscape extensions for figure resizing and editing
cytomining/pycytominer
Python package for processing image-based profiling data
RalfBauerUoS/MEMS-SIM
Supplementary material, code and details about the MEMS-SIM microscope developments
mermaid-js/mermaid
Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown
BrunoLevy/geogram
a programming library with geometric algorithms
SchmollerLab/Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
3b1b/manim
Animation engine for explanatory math videos
ved-sharma/HyperStackReg
An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)
amedyukhina/CS-Sim
Synthetic images with curvilinear structures; 2D and 3D.
computational-cell-analytics/micro-sam
Segment Anything for Microscopy
DanuserLab/u-unwrap3D
Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.
CellMigrationLab/FiloMAP
ImageJ and R scripts used to map the localisation of proteins whithin filopodia and generate filopodia maps.