alexcwsmith
I am an Assistant Professor in the Department of Neuroscience at the Medical University of South Carolina. My lab studies the neurobiology of drug addiction.
Charleston, SC
Pinned Repositories
3D-GAN-superresolution
3D super-resolution using Generative Adversarial Networks
alexcwsmith
B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is an unsupervised learning algorithm written in MATLAB and Python that serves to discover behaviors that are not pre-defined by users.
imageProcessing
Image Processing Scripts
imarisConverter
Convert .ims to .tif
PiRATeMC
A highly flexible, scalable, video recording system for behavioral neuroscience.
scNLP
Mining of PubMed and Natural Language Processing literature on results from single-cell sequencing data
scTriangulate
scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions
singleCellTools
Tools for analysis of single-cell sequencing data, by Alex Smith in the lab of Paul Kenny @ Mount Sinai.
VAME
Variational Animal Motion Embedding
alexcwsmith's Repositories
alexcwsmith/Keras-SRGAN
Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network implemented in Keras
alexcwsmith/SignalBuddy
Arduino Uno based signal generator for scientific applications.
alexcwsmith/striatum_imaging_natureneuro
This is the repository that goes along with Gritton et al. (2019), "Unique contributions of parvalbumin and cholinergic interneurons in organizing striatal networks during movement"