Pinned Repositories
awesome-bacteria
List of computational resources for analyzing bacterial sequencing data.
awesome-microbes
List of computational resources for analyzing microbial sequencing data.
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bash-guide
A guide to learn bash
EDirectCookbook
GeneExpressionAging
Gene expression viewer template
HamHeat
Hamming distance calculation from multilocus sequence data for heatmap visualization
Sequence-Search-Tool-for-Antimicrobial-Resistance-SSTAR-
Antimicrobial resistance gene predictor
the-art-of-command-line
Master the command line, in one page
MetagenomicAntibioticResistance
NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
alexeyrakov's Repositories
alexeyrakov/HamHeat
Hamming distance calculation from multilocus sequence data for heatmap visualization
alexeyrakov/awesome-bacteria
List of computational resources for analyzing bacterial sequencing data.
alexeyrakov/awesome-microbes
List of computational resources for analyzing microbial sequencing data.
alexeyrakov/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
alexeyrakov/bash-guide
A guide to learn bash
alexeyrakov/EDirectCookbook
alexeyrakov/GeneExpressionAging
Gene expression viewer template
alexeyrakov/Sequence-Search-Tool-for-Antimicrobial-Resistance-SSTAR-
Antimicrobial resistance gene predictor
alexeyrakov/the-art-of-command-line
Master the command line, in one page
alexeyrakov/genomics
a collection of scripts and notes
alexeyrakov/hello-world
Just another repository
alexeyrakov/OnlineAdapterDatabase
Linking publicly deposited data to sequencing adapters
alexeyrakov/Proteomic_Correlation_Shiny
A Shiny app to support proteomic correlation
alexeyrakov/PubRunner
Framework for running text mining tools on latest publications. Main page at:
alexeyrakov/shell-genomics
alexeyrakov/SingleCellTranscriptEvidence
alexeyrakov/Staph_aureus_viewer
A NYGC Hackathon Project to Create a JBrowse Viewer for Staph aureus genomes