alexhbnr
I am a computational geneticist that studies human population genetics and human microbiome evolution.
Leipzig, Germany
Pinned Repositories
acc2tax
Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings
aDNA_Guam
alexhbnr.github.io.fork
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AMDirT
Check validity of AncientMetagenomeDir dataset
ancient_metagenome_assembly
automatic_MAG_refinement
Bioinformatics-Training
Bioinformatics training resources
mitoBench-ancientMT
Pipeline for processing (non-)published ancient mtDNA genomes for mitoBench
snakemake-pipeline-template
Cookiecutter template for Snakemake pipelines
yhaplo
Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
alexhbnr's Repositories
alexhbnr/mitoBench-ancientMT
Pipeline for processing (non-)published ancient mtDNA genomes for mitoBench
alexhbnr/ancient_metagenome_assembly
alexhbnr/automatic_MAG_refinement
alexhbnr/effect_aDNAdamage_denovoassembly
alexhbnr/snakemake-pipeline-template
Cookiecutter template for Snakemake pipelines
alexhbnr/aDNA_Guam
alexhbnr/alexhbnr.github.io.fork
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
alexhbnr/AMDirT
Check validity of AncientMetagenomeDir dataset
alexhbnr/analysis-project-structure
Template and documentation on how to structure bioinformatic componenets of projects
alexhbnr/AmpGram
alexhbnr/bamAlignCleaner
Removes unaligned references in BAM alignment file
alexhbnr/cmseq
Set of utilities on sequences and BAM files
alexhbnr/contig_simulation
alexhbnr/DamageProfiler
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
alexhbnr/dotfiles
alexhbnr/download_ena_w_aspera
alexhbnr/enasearch
A Python library for interacting with ENA's API
alexhbnr/mag
Assembly and binning of metagenomes
alexhbnr/MetaPhlAn3tree
alexhbnr/mixemt
A tool for phylogenetic interpretation of human mtDNA sequence mixtures
alexhbnr/nf-core_configs
Config files used to define parameters specific to compute environments at different Institutions
alexhbnr/ONTseq_QC
alexhbnr/phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
alexhbnr/quarto-nvim-kickstarter
A neovim configuration to get you up to speed
alexhbnr/sam2lca
Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
alexhbnr/snakemake-wrapper-utils
Utility functions and classes shared between Snakemake wrappers
alexhbnr/snakemake-wrappers
Modules of common programs and scripts for Snakemake
alexhbnr/snakemake-wrappers-public
This is the development home of the Snakemake wrapper repository, see
alexhbnr/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun metagenomic data
alexhbnr/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..