alexiswl

Genomics Platform Group UMCCR University of Melbourne Automation and Python enthusiast

Melbourne, Australia

Pinned Repositories

allseasons
Language:Python0 2 00
alpine-dask-docker
Tiny Dask Docker images based on Alpine Linux
Language:Dockerfile0 1 00
ASimpleNanoporeTutorial
Language:HTML5 5 02
betaduck
Organising / summarising a PromethION Beta Nanopore Run
Language:Python6 4 00
lifx-tomato-clock
LIFX Pomodoro Timer
Language:Python2 1 00
MultiQC-dragen
Language:Python1 2 01
ONT
A repository of scripts associated with running / analysing of the Oxford Nanopore MinION
Language:Python2 4 02
PoreCampAU
A series of notebooks used for the PoreCampAU workshop held in Australia (8th to 10th of Feb 2017).
Language:Jupyter Notebook7 5 02
poreduck
A comprehensive toolkit for running Oxford Nanopore's MinION
Language:Python12 5 51
UQ_NanoporeDay_20170714
Slides, images and reference for presentation at UQ Nanopore Day on 14th July 2017
Language:HTML1 2 00

alexiswl's Repositories

alexiswl/betaduck
Organising / summarising a PromethION Beta Nanopore Run
Language:Python6 4 00
alexiswl/MultiQC-dragen
Language:Python1 2 01
alexiswl/amazon-genomics-cli
Language:Go1 0
alexiswl/App-AppSpec-p5
Command line utility for working with App::Spec files
Language:Perl1 0
alexiswl/App-Spec-p5
Writing command line apps made easy
Language:Perl0 0
alexiswl/aws-cdk-examples
Example projects using the AWS CDK
Language:Python1 0
alexiswl/aws-genomics-workflows
Genomics Workflows on AWS
Language:Shell1 0
alexiswl/bio-cwl-tools
CWL CommandLineTool descriptions for biology/life-sciences related applications
Language:Common Workflow Language1 0
alexiswl/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
alexiswl/cowsay-motd-cwl
A CWL Workflow to generate a message of the day with helpful hints.
Language:Common Workflow Language1 9
alexiswl/cwl-novice-tutorial
Language:HTML1 0
alexiswl/cwl-ts-auto
Autogenerated TypeScript bindings for CWL
Language:TypeScript0 0
alexiswl/cwl-utils
Python 3.6+ utilities for CWL
Language:Python1 0
alexiswl/cwl-v1.1
Current stable CWL v1.1 specification
Language:Common Workflow Language1 0
alexiswl/cwl_user_guide
The CWL v1.0 user guide
Language:HTML1 0
alexiswl/dracut-crypt-ssh
dracut initramfs module to start dropbear sshd during boot to unlock the root filesystem with the (cryptsetup) LUKS passphrase remotely
Language:C1 0
alexiswl/fancy-motd
Fancy, colorful MOTD written in bash. Server status at a glance.
Language:Shell0 0
alexiswl/gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Language:Java1 0
alexiswl/illumination
:high_brightness: Interacting with Illumina Connected Analytics (ICA) API
Language:EJS1 0
alexiswl/JeremyCollinsDotNet
source code and compilation instructions for my Gatsby-based website
Language:TypeScript1 0
alexiswl/jqplay
A playground for jq, written in Go
Language:Go0 0
alexiswl/kiss-my-rc
Shortcuts / Aliases / Functions for my linux terminal
Language:Shell2 0
alexiswl/mdutils
Python package contains a set of basic tools that can help to create a markdown file.
Language:Python0 0
alexiswl/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python1 0
alexiswl/novice-tutorial-exercises
Language:Common Workflow Language1 0
alexiswl/sampleproject
A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects" (and subsequently updated to learn more about pants/pyoxidizer)
Language:Python0 0
alexiswl/schema_salad
Semantic Annotations for Linked Avro Data
Language:Python1 0
alexiswl/schemastore
A collection of JSON schema files including full API
Language:JavaScript0 0
alexiswl/test-workbench-template
Test new carpentries workbench template
1 0
alexiswl/xdg-utils
Desktop integration utilities
Language:Shell1 0