alexpcheng

bisulfite_cfDNA

Code presented in "as is" condition that analyzes data and generates figures found in Cheng et al, PNAS

cfDNAme

delfi_scripts

gvhd_submission

helping_rougvielab

LowBiomassBackgroundCorrection

R package and vignette to denoise metagenomic cell-free DNA sequencing data.

pellanchenglab

Source code for my website! A huge thanks to Greene Lab for making their template available

spiky

TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

undergraduate_level_cfDNA_lab

Generate simulated "sam-like" files for teaching students how to handle cell-free genomic data

alexpcheng/cfDNAme

alexpcheng/bisulfite_cfDNA

Code presented in "as is" condition that analyzes data and generates figures found in Cheng et al, PNAS

alexpcheng/delfi_scripts

alexpcheng/gvhd_submission

alexpcheng/helping_rougvielab

alexpcheng/LowBiomassBackgroundCorrection

R package and vignette to denoise metagenomic cell-free DNA sequencing data.

alexpcheng/pellanchenglab

Source code for my website! A huge thanks to Greene Lab for making their template available

alexpcheng/spiky

alexpcheng/TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

alexpcheng/undergraduate_level_cfDNA_lab

Generate simulated "sam-like" files for teaching students how to handle cell-free genomic data