alexpmagalhaes

alexpmagalhaes's Stars

• QuKunLab/ecc_pipe

  Language:HTML53

• madagiurgiu25/decoil-pre

  Reconstruct ecDNA from long-read data using Decoil tool

  Language:Python7

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook30836

• drpowell/degust

  An interactive web-tool for RNA-seq analysis

  Language:JavaScript6629

• alexpmagalhaes/ChIPseq_course

  1

• alsyundawy/Microsoft-Office-For-MacOS

  Installer & Activited Microsoft Office For MacOS

  1.9k247

• enblacar/SCpubr

  Generate high quality, publication ready visualizations for single cell transcriptomics data.

  Language:R14013

• alexpmagalhaes/R-course

  MolMed-R-course

  1

• alexpmagalhaes/IDR-variant-catalog

  This is a repository for IDR variant catalogue of the paper "Disruption of nucleolar phase separation is a frequent pathomechanism in genetic disease"

  Language:Jupyter Notebook2

• zhanghao-njmu/SCP

  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

  Language:R32871

• arumds/webgqt

  shiny server for genotype query tools

  Language:R4

• ryanemenecker/alphaPredict

  A predictor of confidence scores generated by AlphaFold2.

  Language:Python1

• normandavey/ProcessedAlphafold

  313

• andrewheiss/datavizm20.classes.andrewheiss.com

  🎓 GSU MPA/MPP course on data visualization with R and ggplot2

  Language:HTML8551

• dsurujon/ShinyOmics

  Exploration of Omics data

  Language:R259

• MariaNattestad/Ribbon

  A genome browser that shows long reads and complex variants better

  Language:JavaScript25229

• agaudinier/Gaudinier2018

  Code for Gaudinier et al 2018

  Language:R52

• benmaier/netwulf

  Interactive visualization of networks based on Ulf Aslak's d3 web app.

  Language:Python29126

• zonination/perceptions

  Perceptions of Probability and Numbers

  Language:R80494

• p2irc/deepplantphenomics

  Deep learning for plant phenotyping.

  Language:Python13146

• BaselAbujamous/clust

  Automatic and optimised consensus clustering of one or more heterogeneous datasets

  Language:Python16035

• Crop-Phenomics-Group/Leaf-GP

  Language:Jupyter Notebook277

• groupschoof/AHRD

  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

  Language:Java6320

• raphv/gexf-js

  A JavaScript GEXF viewer

  Language:JavaScript302104

• QTCAT/qtcat

  Quantitative Trait Cluster Association Test in R

  Language:R259

• chipster/chipster

  Chipster is a user-friendly analysis software for high-throughput data.

  Language:Java3313

• PASApipeline/PASApipeline

  PASA software

  Language:Perl16858

• Bohdan-Khomtchouk/Microscope

  ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

  Language:R2316

• konstantint/pyliftover

  Pure-python implementation of UCSC liftOver genome coordinate conversion

  Language:Python8713

• BioJulia/Bio.jl

  [DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

  Language:Julia26165