Interactive three-dimensional viewer for our upcoming publication that investigates the surface-supported coupling and cyclization reactions of enediyne molecules using nc-AFM.
http://alexriss.github.io/intermediates-viewer/
This viewer shows representations of the relaxed molecular geometries, the kinetic energy dissipation calculations, as well as time evolution of the calculated kinetic energy for a molecular transformation step.
The project is based on:
- imolecule (Copyright (C) 2013 Patrick Fuller, patrick-fuller.com)
- three.js
- PapaParse (Copyright (c) 2015 Matthew Holt)
- chroma (Copyright (c) 2011-2013, Gregor Aisch)
- jQuery
The rendered views (i.e. the displayed structures) can be used under a Creative Commons Attribution-ShareAlike 3.0 Unported License.