Pinned Repositories
CinC2016
PhysioNet Challenge 2016
ClipNet
Identify co-functioning RBPs
KIR_development
Development of KIR CN tool
Metadensity
Define metadensity to predict RNA binding protein function
oligoCLIP
pipeline for oligoCLIP
ontoencoder
Autoencoder based on Biological Ontology to embed single cell data
ontoPrune
To prune low information terms in Gene Ontology
RBPNet
Training RBPNet from skipper
resistanceExp
My research project on antibiotic resistance prediction
weighted_mutual
Domain sharing to infer protein functional correlation based on weighted mutual information
algaebrown's Repositories
algaebrown/resistanceExp
My research project on antibiotic resistance prediction
algaebrown/Metadensity
Define metadensity to predict RNA binding protein function
algaebrown/oligoCLIP
pipeline for oligoCLIP
algaebrown/ClipNet
Identify co-functioning RBPs
algaebrown/RBPNet
Training RBPNet from skipper
algaebrown/weighted_mutual
Domain sharing to infer protein functional correlation based on weighted mutual information
algaebrown/ADAR
algaebrown/algaebrown.github.io
Personal site
algaebrown/circfull
a tool to detect and quantify full-length circRNA isoforms from circFL-seq
algaebrown/circSTAMP_pipe
algaebrown/co-inheritance
Play with peri-odontal disease metagenome; Aim at a functional perspective
algaebrown/cse291spr21
algaebrown/DeepRecipe
algaebrown/f-SHAPE-eCLIP
Generate fSHAPE/SHAPE reactivity profiles from (f)SHAPE-eCLIP reads.
algaebrown/FMRP_tutorial
FMRP tutorial for Jenn/Yu Liang
algaebrown/IPAFinder
Systematic analyses of intronic polyadenylation from standard RNAseq data
algaebrown/make_track
Making eCLIP coverage, CITS, CIMS tracks
algaebrown/merge_peaks
Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
algaebrown/Mudskipper_analysis
Analysis for tool Mudskipper, built to analyze multiplex CLIP
algaebrown/multiplexCLIP_benchmark
algaebrown/oligoCLIP_analysis
notebooks for oligoCLIP analysis
algaebrown/Porechop
adapter trimmer for Oxford Nanopore reads
algaebrown/prismnet
algaebrown/QC_tools
utilities for commonly used sequencing quality control statistics
algaebrown/RBP_annot
algaebrown/scSecretome
algaebrown/skipper
Skip the peaks and expose RNA-binding in CLIP data
algaebrown/Stefan_NONO
Doing eCLIP analysis for Stefan's NONO. Stefan drug some NONO, and wants to know how the drug change NONO's behaviour
algaebrown/tsne-popgen
Embed population genetics data using t-sne
algaebrown/tutorials