algo-cancer

Pinned Repositories

bakir
Language:Python0 0 00
CAMMiQ
Metagenomics microbial abundance quantification
Language:C++27 2 60
DETOPT
DETOPT is a combinatorial optimization method for DETermining Optimal Placement in Tumor progression history of SNVs from the genomic regions impacted by CNAs using multi-sample bulk DNA sequencing data
Language:Python2 2 00
ImmunoTyper-SR
Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data
Language:Python8 3 51
lab-wiki
0 3 00
PhISCS-BnB
A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem
Language:Python8 2 04
PhyloM
Tumor Phylogeny Topology Inference via Deep Learning
Language:Python7 2 13
Sgootr
This is the repository for Sgootr, a tool that jointly infers a tumor lineage tree and selects lineage-informative features using single-cell methylation sequencing data
Language:Python1 2 10
bakir
Biologically-informed Killer cell immunoglobulin-like receptor (KIR) gene annotation tool 🧬
Language:Python1 1 01

algo-cancer's Repositories

algo-cancer/CAMMiQ
Metagenomics microbial abundance quantification
Language:C++27 2 60
algo-cancer/ImmunoTyper-SR
Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data
Language:Python8 3 51
algo-cancer/PhISCS-BnB
A Fast Branch and Bound Algorithm for the Perfect Tumor Phylogeny Reconstruction Problem
Language:Python8 2 04
algo-cancer/PhyloM
Tumor Phylogeny Topology Inference via Deep Learning
Language:Python7 2 13
algo-cancer/DETOPT
DETOPT is a combinatorial optimization method for DETermining Optimal Placement in Tumor progression history of SNVs from the genomic regions impacted by CNAs using multi-sample bulk DNA sequencing data
Language:Python2 2 00
algo-cancer/Sgootr
This is the repository for Sgootr, a tool that jointly infers a tumor lineage tree and selects lineage-informative features using single-cell methylation sequencing data
Language:Python1 2 10
algo-cancer/bakir
Language:Python0 0 00
algo-cancer/lab-wiki
0 3 00