Pinned Repositories
2017-10-31-norwich
AAfun
ASReml-R Added functions
game_of_life
ImageInfo
renseq
Renseq Pacbio pipeline
ansible_plays
cyverse_website
Documentation
Wiki of CyVerseUK project. Tutorials and overview of technologies.
mikado
Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
Genome-Size-Evolution-Project
HOME OF THE 2-SPEED GENOME MODEL
aliceminotto's Repositories
aliceminotto/game_of_life
aliceminotto/renseq
Renseq Pacbio pipeline
aliceminotto/2017-10-31-norwich
aliceminotto/AAfun
ASReml-R Added functions
aliceminotto/ImageInfo
aliceminotto/biojs-vis-expression-bar
aliceminotto/cicd-pipeline-train-schedule-git
Train Schedule sample app for Git exercises
aliceminotto/COPO
Collaborative Open Plant Omics
aliceminotto/cyverseuk-util
A collection of scripts for the cyverse UK clusters
aliceminotto/demo_image
tiny blast image for workshop demonstration
aliceminotto/docker
aliceminotto/EarlhamInstitute_scripts
aliceminotto/gitpitch_test
aliceminotto/JSON.sh
a pipeable JSON parser written in Bash
aliceminotto/kallisto_docker
docker image for kallisto
aliceminotto/lab_journal
aliceminotto/metadata
For version control of DToL metadata including (but not limited to) the Sample manifest documents
aliceminotto/model_scripts
aliceminotto/model_version2
second model with classes
aliceminotto/papaya
aliceminotto/polymarker_docker
dockerfile for automate build
aliceminotto/python-novice-inflammation
Software Carpentry introduction to Python for novices using inflammation data.
aliceminotto/redis
Redis is an in-memory database that persists on disk. The data model is key-value, but many different kind of values are supported: Strings, Lists, Sets, Sorted Sets, Hashes, Streams, HyperLogLogs, Bitmaps.
aliceminotto/scripts
aliceminotto/shields
Shields badge specification, website and default API server
aliceminotto/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
aliceminotto/TSL-Training.github.io