/multiplexed

Highly Multiplexed Super-Resolution Imaging

Primary LanguagePythonMIT LicenseMIT

Multiplexed

This is the repository for working on Highly Multiplexed Super-Resolution Imaging. It includes pipeline for working on super-resolution florescent synapse data.

It provides features from the histograms of the synapse picks as well as clustering based features. You can find a juypter notebook in the docs

TODO:

  • correct the DBSCAN clustering
  • add alphashape volume for for alpha = 0.5 on the dbscan filtered data
  • add volume intersection of alpha shape data