alihashmiii
postdoctoral scholar @ University of Helsinki | biophysicist | mechanical engineer | studies biophysics
Helsinki YliopistoHelsinki
Pinned Repositories
2D-vertex-model
vertex model for simulating two-dimensional epithelial tissues
3D-Segmentation-of-Cell-Nuclei
segment cell nuclei in a 3-D cluster
3D-Vertex-Model
vertex model implementation to simulate biological tissue in 3D
Autocorrelation-and-Crosscorrelations
1D and 2D auto/cross correlations in wolfram
Elliptical-Fourier-Descriptors
elliptical fourier descriptors with and without lobe contributions
Force-Inference
implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura
Lineage-Mapper
an overlap based cell-tracker based on Chalfoun et al, Nat. Sci. Rep. 2016
Nematic-Defect
compute nematic defects from images
UNET-segmentation-PythonMXNET
using Deep Learning to automate aggregate segmentation
UNet-Segmentation-Wolfram
neural network for obtaining binarized mask for objects in grayscale images
alihashmiii's Repositories
alihashmiii/UNet-Segmentation-Wolfram
neural network for obtaining binarized mask for objects in grayscale images
alihashmiii/Elliptical-Fourier-Descriptors
elliptical fourier descriptors with and without lobe contributions
alihashmiii/3D-Vertex-Model
vertex model implementation to simulate biological tissue in 3D
alihashmiii/2D-vertex-model
vertex model for simulating two-dimensional epithelial tissues
alihashmiii/Force-Inference
implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura
alihashmiii/Lineage-Mapper
an overlap based cell-tracker based on Chalfoun et al, Nat. Sci. Rep. 2016
alihashmiii/3D-Segmentation-of-Cell-Nuclei
segment cell nuclei in a 3-D cluster
alihashmiii/Autocorrelation-and-Crosscorrelations
1D and 2D auto/cross correlations in wolfram
alihashmiii/cellular-potts-model
a mathematica implementation of the cellular-potts model
alihashmiii/curvatureMeasure
for measuring curvature along the boundary of an image object
alihashmiii/custom-wolfram-functions-and-misc-notes
custom functions for research and misc
alihashmiii/Mean-Gaussian-Curvature
compute Gaussian and Mean Curvature
alihashmiii/numeric_symbolic_schemes
mathematica notebooks for solving numerical and symbolic problems (PDEs, FEM, Optimisation)
alihashmiii/SMtrack
single molecule tracking
alihashmiii/Nematic-Defect
compute nematic defects from images
alihashmiii/2D-Hydrophilic-Hydrophobic-Sequence-Folding
favourable energy states of a 2D hydrophilic/phobic string
alihashmiii/alihashmiii
github profile
alihashmiii/artistoo
CPM implementation in pure javascript (Node module)
alihashmiii/BayesianForceInference
Bayesian force inference in epithelial tissue
alihashmiii/bond-orientational-order
determine local crystalline domains in agglomerates
alihashmiii/cell-flow-analysis
alihashmiii/computer-related-stuff
things that are important and can save time
alihashmiii/FEMAddOns
Finite Element Method addons for Wolfram Language
alihashmiii/helfrich-model
alihashmiii/MECAGEN
Simulation platform of animal embryogenesis
alihashmiii/quickPIV
alihashmiii/Spheroid-Simulation
code based on a study "https://journals.aps.org/prx/pdf/10.1103/PhysRevX.8.021025"
alihashmiii/Spindle
Repository for the Dimitracopoulos et al. paper (2020)
alihashmiii/tvm
3D Vertex Model
alihashmiii/WolframLanguageForJupyter
Wolfram Language kernel for Jupyter notebooks