alikhuseynov
Data analysis, Visualization, Computational biology, Spatial omics
DKFZ/German Cancer Research CenterHeidelberg
Pinned Repositories
add-on_R
Add-on functions for various R packages
alikhuseynov
Libra
make3dOrganoid
reconstruct 3D organoid models from 2D bright field images using R
registSurAuto3d
It's an open-source method using different R libraries. Useful for 3D phenotypic quantification and morphometric analysis.
RESOLVE_tools
Tentative set of tools and scripts for analysing spatial transcriptomic data with the resolve platform
seurat
R toolkit for single cell genomics
SpatialFeatureExperiment
Extension of SpatialExperiment with sf
st_2d3d
Visualizing gene expression topography in 2D and 3D.
xfuse_heartVisium
Deep Learning tool - xfuse - on 10X Visium heart (public dataset)
alikhuseynov's Repositories
alikhuseynov/xfuse_heartVisium
Deep Learning tool - xfuse - on 10X Visium heart (public dataset)
alikhuseynov/add-on_R
Add-on functions for various R packages
alikhuseynov/registSurAuto3d
It's an open-source method using different R libraries. Useful for 3D phenotypic quantification and morphometric analysis.
alikhuseynov/alikhuseynov
alikhuseynov/Libra
alikhuseynov/make3dOrganoid
reconstruct 3D organoid models from 2D bright field images using R
alikhuseynov/RESOLVE_tools
Tentative set of tools and scripts for analysing spatial transcriptomic data with the resolve platform
alikhuseynov/seurat
R toolkit for single cell genomics
alikhuseynov/SpatialFeatureExperiment
Extension of SpatialExperiment with sf
alikhuseynov/st_2d3d
Visualizing gene expression topography in 2D and 3D.
alikhuseynov/voyager
From geospatial to spatial -omics