/dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

Primary LanguagePythonMIT LicenseMIT

Snakemake workflow: dna-seq-gatk-variant-calling

DOI Snakemake GitHub actions status

This Snakemake pipeline implements the GATK best-practices workflow for calling small germline variants.

Usage

The usage of this workflow is described in the Snakemake Workflow Catalog.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).