Scala implementation of biocache backend. This code base manages the loading, processing, sampling and indexing of occurrence records for the ALA. There are additional tools to support outlier detection, duplicate detection and identifying extra-limital outliers based on authoritative distribution polygons for taxa. Please use the Ansible scripts to set this software up in your own environment.
https://github.com/gbif/ala-install
Questions and comment on the scripts are welcome here: ala-portal@lists.gbif.org
This library is built with maven. By default a mvn install will try to run a test suite which will fail without a local installation of a name index.
The name index can be downloaded here and needs to be extracted to the
directory /data/lucene/namematching
To skip this step, run a build with mvn install -DskipTests=true.
or wherever the name.dir is configured to point to in your /data/biocache/config/biocache-config.properties file.
- reindexing fixes
- fixes to test
- lucene indexes
- changes to allow compiling with java 6
- distribution package changes
- this will be manipulated by ansible scripts to create an executable jar
- Git version information for command line tools
- added the ability to override vocabulary files with files external to built executables
- change SCM config to Git
- removal of println, and obsolete imports
- fixes to make media loading more robust, and changes to duplicate detection to avoid JSON serialisation problems
- full file extraction with support for Zips with subdirectories (required for GBIF archive loading)
- bvp hub update of data resources
- removed old sandbox code to reduce confusion
- jackson update
- jacknife fix
- BVP data harvesting support
- typo in log statement
- case insensitive check
- fixes for sounds files
- remote media store support
- resampling support
- split index merge into separate tool
- enhancements for a more executable biocache package - still requiring a maven job to package final executable
- changes for release management
- Copy new package structure
- committed after review
- Fix for Embedded Solr Server
- build fix
- added patches from r4273
- removed println from tests
- scaladoc
- remove println
- doco and minor fixes for consistency
- fixes for package path
- reorganisation of packages