Pinned Repositories
bamtofastq
Converts bam or cram files to fastq format and does quality control.
CTAT-VirusIntegrationFinder
GoodDocData
A Template for Clear and Simple Documentation of Hackathon Projects
ra2-docker-demo
A demonstration of how to configure your docker container for running in the RA2 DREAM Challenge
vcf2maf-docker
ml-in-rd
Manuscript for perspective on machine learning in rare disease
nf-hackathon-2019
Guided data tour for the 2019 NF Hackathon in San Francisco, CA
nf-research-tools-schema
nfportalutils
Utilities for NF Portal project and data management
polypharmacology-db
This app enables exploration of the Drug-Target Explorer database.
allaway's Repositories
allaway/vcf2maf-docker
allaway/bamtofastq
Converts bam or cram files to fastq format and does quality control.
allaway/CTAT-VirusIntegrationFinder
allaway/data_curator_config
Project configurations for the Data Curator App
allaway/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
allaway/Kids-First-Elements-of-Style-Workflow-Creation-Maintenance
allaway/latex-yearly-planner
Digital planner for Supernote and ReMarkable // Support Ukraine 🇺🇦 https://www.comebackalive.in.ua/
allaway/nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
allaway/nf-core-sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
allaway/nf-synindex
Nextflow pipeline for indexing S3 objects in Synapse
allaway/personal-blocklist
personal pihole blocklist
allaway/polypharmacology-db
This app enables exploration of the Drug-Target Explorer database.
allaway/portals
React component based configurations that generate community portals built on top of Synapse
allaway/sasha-skill-assessments
Training requirements for joining projects
allaway/schematic_db
A python package that manages data backends for schematic
allaway/scicomp-provisioner
An service to auto provision resources on AWS scicomp
allaway/Synapse-Repository-Services
The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
allaway/synapse-web-monorepo
Monorepo for Synapse Web projects
allaway/synapsePythonClient
Programmatic interface to Synapse services for Python
allaway/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
allaway/data_curator
Data Ingest Shiny App
allaway/dNFLandscape
Landscape of Dermal NF
allaway/giphy-allowlist
An allowlist/whitelist to pair with a pan-facebook blocklist.
allaway/its-a-plane-python
allaway/nf-vcf2maf
Annotate VCF files using VEP and generate MAF files using vcf2maf
allaway/organizations-infra
Sage AWS Organizations
allaway/phishing
Central Repository for Adding Domains / Links to the Phishing.Database project - https://github.com/mitchellkrogza/Phishing.Database/
allaway/pubchem_curation
One-off scripts to curate pubchem data.
allaway/r-dose-response
A list of R dose-response packages
allaway/viralintegration