allen-chang

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

seqslabapps

assets

deepvariant-on-spark

DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

graphseq

String Graph Construction on Spark

JSON-schemas

JSON schemas for genomics and health data exchange and forms

seqslab-connector

SeqsLab cluster and data lakehouse connector for Python

seqslab-docs-operator-pipeline-api

API docs for SeqsLab operator pipeline in distributed workflow execution

seqslab-operators

Atgenomix Operators are SeqsLab platform plugins and open-source Cromwell extensions that streamline heterogeneous data integration and transformation, and scale complex workflow tasks, using distributed computing clusters and GPU accelerators.

shinyapps

Shiny apps on Atgenomix SeqsLab

allen-chang/cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments