Pinned Repositories
bigquery-openstreetmap
bigquery-openstreetmap
contextual-bandit
working example of a contextual multi-armed bandit
ethereum-streaming-analytics-demo
Process Ethereum data with Pubsub and Dataflow
github-solidity-all
All *.sol files from github in a single repo
image-similarity
Canny edges + color histograms + KD-tree indexing
nanostream-dataflow
real-time stream processing of DNA nanopore sequencer reads with dataflow
R-Storm
spark-genome-alignment-demo
An example of bioinformatics and bigdata tools can playing nicely together
web3-analytics-demo
allenday's Repositories
allenday/R-Storm
allenday/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
allenday/avocado
A Variant Caller, Distributed. Apache 2 licensed.
allenday/bedtools2
A powerful toolset for genome arithmetic.
allenday/biobambam
Tools for bam file processing
allenday/bittorrent-dht
Simple, robust, BitTorrent DHT implementation
allenday/blog
Source code of Blog at
allenday/BOH
Bo#
allenday/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
allenday/caffe
Caffe: a fast open framework for deep learning.
allenday/clockworkraven
Human-Powered Data Analysis with Mechanical Turk
allenday/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
allenday/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
allenday/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
allenday/htslib
C library for high-throughput sequencing data formats
allenday/jem-docker
Docker container capable of running an iPython notebook server, for "Just Enough Math"
allenday/jkad
allenday/kentUtils
UCSC command line bioinformatic utilities
allenday/libmaus
libmaus
allenday/neuraltalk
NeuralTalk is a Python+numpy project for learning Multimodal Recurrent Neural Networks that describe images with sentences.
allenday/okcupidjs
Automate your OKCupid Activity. This is an API Wrapper for OkCupid App, allowing you to automate processes and collect data for further analysis
allenday/picard
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
allenday/qss-genomics
allenday/rice
An RNA pipeline built on top of ADAM. Apache 2 licensed.
allenday/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
allenday/sequencing-utils
allenday/skip-thoughts
Sent2Vec encoder and training code from the paper "Skip-Thought Vectors"
allenday/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
allenday/ubu
UNC-Chapel Hill Bioinformatics Utilities
allenday/WebCola
Javascript constraint-based graph layout