Pinned Repositories
AmpSim
Saeed's code for synthetic variant bam creation
BioLlama
bioinformatics tools
bitstarter
This is a barebones Node.js app using the Express framework.
CellTics
Center for Integrated Diagnostics at Mass General Hospital NGS tools
CloudFoundry-EnvironmentDemo
Demonstration application that runs easily on Cloud Foundry
COSMOS2
Python Scientific Pipeline Management System
expression
Calculate RNA expression from RNA/DNA ratio
java-buildpack
Cloud Foundry buildpack for running Java applications
LiRA
MachineLearning_CS6140
Homework for CS6140 at Northeastern
alliemclean's Repositories
alliemclean/BioLlama
bioinformatics tools
alliemclean/AmpSim
Saeed's code for synthetic variant bam creation
alliemclean/bitstarter
This is a barebones Node.js app using the Express framework.
alliemclean/CellTics
Center for Integrated Diagnostics at Mass General Hospital NGS tools
alliemclean/CloudFoundry-EnvironmentDemo
Demonstration application that runs easily on Cloud Foundry
alliemclean/COSMOS2
Python Scientific Pipeline Management System
alliemclean/expression
Calculate RNA expression from RNA/DNA ratio
alliemclean/java-buildpack
Cloud Foundry buildpack for running Java applications
alliemclean/LiRA
alliemclean/MachineLearning_CS6140
Homework for CS6140 at Northeastern
alliemclean/misc
Miscellaneous files
alliemclean/neu-stat
alliemclean/SeqPrep
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
alliemclean/Sophia
alliemclean/ssnmf
SSNMF models and multiplicative update methods.
alliemclean/TCGA_processed_data_repo
alliemclean/umi
Preprocessing tools for unique molecular index (UMI) sequencing reads