THIS PIPELINE IS A WORK IN PROGRESS. Thanks for checking it out! Hopefully it will be fonctional soon.
Assembly, binning and annotation of metagenomes
nf-core/mag: Assembly, binning and annotation of metagenomes
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.
The nf-core/mag pipeline comes with documentation about the pipeline, found in the docs/
directory:
- Installation
- Pipeline configuration
- Running the pipeline
- Output and how to interpret the results
- Troubleshooting
This pipeline was written by Hadrien Gourlé (HadrienG) at SLU.