/mag

UNDER CONSTRUCTION: Assembly, binning and annotation of metagenomes.

Primary LanguageNextflowMIT LicenseMIT

[UNDER CONSTRUCTION] nf-core/mag

THIS PIPELINE IS A WORK IN PROGRESS. Thanks for checking it out! Hopefully it will be fonctional soon.

Assembly, binning and annotation of metagenomes

Build Status Nextflow

install with bioconda Docker Singularity Container available

Introduction

nf-core/mag: Assembly, binning and annotation of metagenomes

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker / singularity containers making installation trivial and results highly reproducible.

Documentation

The nf-core/mag pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

Credits

This pipeline was written by Hadrien Gourlé (HadrienG) at SLU.