aloejhb
PhD student in Rainer Friedrich Lab working on connectomics and neuronal data analysis
Friedrich Miescher Institute for Biomedical ResearchBasel, Switzerland
Pinned Repositories
aloejhb.github.io
Bo's blog
catrace
A python package for calcium imaging time trace analysis
CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
dsb_model
DNA double-strand break repair model
EMana
analysis of SBEM images
fun
neuRoi
SBEMimage
Versatile acquisition software for serial block-face electron microscopy
gfriedri-em-alignment
Alignment tools used in the Friedrich lab.
neuRoi
aloejhb's Repositories
aloejhb/catrace
A python package for calcium imaging time trace analysis
aloejhb/neuRoi
aloejhb/aloejhb.github.io
Bo's blog
aloejhb/CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
aloejhb/dsb_model
DNA double-strand break repair model
aloejhb/EMana
analysis of SBEM images
aloejhb/fun
aloejhb/hello-world
My first github repository
aloejhb/prefattach
Graph generator based on preferential attachment model
aloejhb/pyava
aloejhb/PyKNOSSOS
PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation of 3D electron microscopy stacks of brain tissue. http://www.ariadne-service.com
aloejhb/SBEMimage
Versatile acquisition software for serial block-face electron microscopy
aloejhb/neural_manifolds_replicaMFT
aloejhb/pynrngain
aloejhb/pyrcca
Regularized kernel canonical correlation analysis in Python
aloejhb/Pytorch-UNet
PyTorch implementation of the U-Net for image semantic segmentation with high quality images
aloejhb/reciproc
aloejhb/RegistrationTree
aloejhb/seaborn
Statistical data visualization in Python
aloejhb/slicetca
Library to perform Slice Tensor Component Analysis (sliceTCA)
aloejhb/Spikefinder-Elephant
Keras network for spike detection from calcium traces