Pinned Repositories
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
Achilles_v4
AchillesWeb
Interactive web site for reviewing the results of the Achilles R package.
annotator
Annotation tools for the web. Select text, images, or (nearly) anything else, and add your notes.
ArachneCommons
Commons module contains common code re-used between all Arachne components
Ares
A Research Exploration System
CdmCutover
R package for preparing CDMs for implementation in Atlas
PhenotypeCharacterization
Phenotype Characterization functions used in the OHDSI F2F 2017
PregnancyAlgorithm
SqlRender
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
alondhe's Repositories
alondhe/SqlRender
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
alondhe/Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
alondhe/ArachneCommons
Commons module contains common code re-used between all Arachne components
alondhe/Ares
A Research Exploration System
alondhe/AresIndexer
R package that creates the index and relevant files for an Ares deployment.
alondhe/Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
alondhe/AtlasModule
A strategus module for integrating Atlas assets
alondhe/Broadsea
Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
alondhe/Broadsea-Atlasdb
A Postgresql database in a Docker container for OHDSI Atlas/WebAPI
alondhe/Broadsea-Dqd
[under development]
alondhe/Broadsea-Hades
[under development]
alondhe/Broadsea-Solr
[under development]
alondhe/Broadsea-WebTools
A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.
alondhe/CohortDiagnostics
An R package for performing various cohort diagnostics.
alondhe/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
alondhe/DatabaseConnector
An R package for connecting to databases using JDBC.
alondhe/DatabaseConnectorJars
An R package containing the external JAR dependencies of the DatabaseConnector package.
alondhe/DataQualityDashboard
A tool to help improve data quality standards in observational data science.
alondhe/ETL-CDMBuilder
ETL-CDMBuilder is a repo containing a .NET application to perform ETL to OMOP CDMv4 for multiple databases
alondhe/EunomiaGiBleedCohort
alondhe/Hades
Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
alondhe/OhdsiQuarto
Repository of useful Quarto documents for OHDSI projects
alondhe/Perseus
[under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack
alondhe/remotes
Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
alondhe/ROhdsiWebApi
An R package for interfacing with a WebAPI instance
alondhe/ShinyDeploy
Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
alondhe/Strategus
[Under development] An R packages for coordinating and executing analytics using HADES modules
alondhe/TxPathways
[under development] OHDSI tool to build treatment history of population and derive summary statistics of patterns of treatment
alondhe/WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
alondhe/WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.