Pinned Repositories
AxiovertControl
Arduino based controller for Zeiss Axiovert, developed at Krichevsky lab, BGU.
bigstitchparallel
Bash scripts to parallelize and streamline BigStitcher
computational_biology
course material
CorneaImageAnalysis
Image analysis code to analyze ex vivo corneas
DIP
Intro workshop on Digital Image Processing with Python
JuliesAnts
MATLAB code to analyze ants food sharing, I believe.
NatComms2021_SpatialStochSIR
Spatial stochastic SIR model of viral spread
oyDL
Some utilities for deploying resnet classifier using torch
oyLabImaging
Code for analysis and organization of microscopy data
TNFGuardModels
Models for "Synergy Between TNFα and Proteostatic Stress Drives Cell Death and Guard Immunity" By Sonnett et al.
alonyan's Repositories
alonyan/DIP
Intro workshop on Digital Image Processing with Python
alonyan/bigstitchparallel
Bash scripts to parallelize and streamline BigStitcher
alonyan/AxiovertControl
Arduino based controller for Zeiss Axiovert, developed at Krichevsky lab, BGU.
alonyan/computational_biology
course material
alonyan/CorneaImageAnalysis
Image analysis code to analyze ex vivo corneas
alonyan/JuliesAnts
MATLAB code to analyze ants food sharing, I believe.
alonyan/lap
Linear Assignment Problem solver (LAPJV/LAPMOD).
alonyan/NatComms2021_SpatialStochSIR
Spatial stochastic SIR model of viral spread
alonyan/makemeacocktail
alonyan/MatlabFolder
alonyan/Metadata
Wollman lab image metadata - Matlab/Python classes to interact with images.
alonyan/minerva-author
Tool to create images and configuration files for Minerva-Story
alonyan/MultiPurposeImageAnalysisTools
alonyan/multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
alonyan/openspim-parts
3D printable parts for OpenSPIM setups
alonyan/OpticNerve
Work done for optic nerve image analysis with members of Stein eye institute
alonyan/oyFRET
Code for analysis and organization of microscopy data, FRET variant
alonyan/PythonFlowCytometryStartup
code and instructions on how to start analysis of flow data with python
alonyan/PythonModules
alonyan/RazorScope_Modifications
Hardware modifications for RazorScope
alonyan/Results
Classes and functions to analyze and store results of microscopy experiments
alonyan/SpatialStochasticSIR
alonyan/SPIMSingleCellAnalysis
Single cell analysis of multicolor SPIM Data.