alopgar

CBGPMadrid

Pinned Repositories

BLUPPP
Pipeline that prepares genotypes files for BLUPF90
Language:Shell00
microDA
Extended R utilities for microbiome analysis
Language:R00
CoreOme
Taxonomy and prevalence filter pipeline for microbiome datasets adapted to SqueezeMeta_Reads output
Language:R00
RNASEQ-analysis
Pipeline for RNAseq analysis using Htseq-Count
Language:Shell00
16S-analysis
Pipeline for 16S analysis with mothur
Language:Shell11
MEGAN-analysis
DIAMOND + MEGAN pipeline for Nanopore MinION metagenome data.
Language:Shell20
R-course
Files for R course at INIA (Madrid)
Language:HTML00
R-metagenomics
Pipeline for analysis of metagenomic sequences
00
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C1.3k181
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Language:Perl21348

alopgar's Repositories

alopgar/microDA
Extended R utilities for microbiome analysis
Language:R
alopgar/BLUPPP
Pipeline that prepares genotypes files for BLUPF90
Language:Shell
alopgar/CoreOme
Taxonomy and prevalence filter pipeline for microbiome datasets adapted to SqueezeMeta_Reads output
Language:R
alopgar/R-metagenomics
Pipeline for analysis of metagenomic sequences
alopgar/R-course
Files for R course at INIA (Madrid)
Language:HTML
alopgar/RNASEQ-analysis
Pipeline for RNAseq analysis using Htseq-Count
Language:Shell
alopgar/MEGAN-analysis
DIAMOND + MEGAN pipeline for Nanopore MinION metagenome data.
Language:Shell2
alopgar/16S-analysis
Pipeline for 16S analysis with mothur
Language:Shell11