alosdiallo/HMS_Immunology_RNASeq

This is the pipeline for RNA Seq analysis for labs in the HMS Immunology Department

HMS Immunology RNASeq Pipeline

This is the pipeline for RNA Seq analysis for labs in the HMS Immunology Department

Installation instructions

• You must have R & Rstudio installed on your computer. Instructions can be found in [here].(https://github.com/alosdiallo/HMS_Immunology_RNASeq/blob/master/R_Rstudio_Installation.md)
• To use HMS O2 Cluster, you should install the following:
  • Putty & WinSCP (for Windows).
  • (for Linux).

The follow species are currently supported by the App

1. mouse: mm9, mm10
   
2. human: Hg19, Hg38
   

References

This application utilizes the following R packages:

1. DESeq2
2. edgeR
3. PoiClaClu
4. biomaRt

Authors

Karni Bedirian - Department of Immunology, Harvard Medical School
Alos Diallo - Department of Immunology, Harvard Medical School
Osmaan Shahid - Department of Immunology, Harvard Medical School

Copyright © 2018 the President and Fellows of Harvard College.

MIT License