Pinned Repositories
2025-01-27-plotnado-workshop
BamNado
bioconda-recipes
Conda recipes for the bioconda channel.
CapCruncherTools
Faster utilities to speed up CapCruncher
ccanalyser
cgat-core
Core functionality of the CGAT code
plotnado
SeqNado
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline
TrackNado
Command line utility to generate UCSC hubs from a set of files (e.g. bigWig, bigBed etc)
CapCruncher
Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
alsmith151's Repositories
alsmith151/SeqNado
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline
alsmith151/CapCruncherTools
Faster utilities to speed up CapCruncher
alsmith151/TrackNado
Command line utility to generate UCSC hubs from a set of files (e.g. bigWig, bigBed etc)
alsmith151/plotnado
alsmith151/2025-01-27-plotnado-workshop
alsmith151/BamNado
alsmith151/bioconda-recipes
Conda recipes for the bioconda channel.
alsmith151/ccanalyser
alsmith151/cgat-core
Core functionality of the CGAT code
alsmith151/chipseq_tutorial
Very quick ChIP-seq processing tutorial
alsmith151/genomics_utilities
alsmith151/LanceOtron
alsmith151/CoolBox
Jupyter notebook based genomic data visualization toolkit.
alsmith151/rnaseq_pipeline
alsmith151/rsbamtk
Rust based BAM file toolkit
alsmith151/rust_bam_tools
Tools for interacting with BAM files using Rust with Python bindings.
alsmith151/rust_tsv_tools
alsmith151/signac
R toolkit for the analysis of single-cell chromatin data
alsmith151/single_cell_tools
Bindings for rust tools designed to help with the brute force aspect of single cell data processing