altingia

algorithm-note

该系列包括数组，链表，树，图，递归，DP，有序表等相关数据结构与算法的讲解及代码实现。

Barthea_genome_manuscript

pipeline and scripts used in the data analysis of manuscript for genome and population genomics

Barthea_TE_manuscript

scripts and pipelines for TE analysis

EasyCodeML

freecodecamp.cn

The FreeCodeCamp.cn(FCC China) open source codebase and curriculum. Learn to code and help nonprofits.

geta

ksrates

ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

ngs_te_mapper2

Software for detecting transposable element insertions from next-generation sequencing data

phylogenomics_pipeline

After gene family clusing using Orthofinder, single copy nuclear genes and low copies nuclear genes were used to infer the phlogenies between related taxon, three types of data or algorithms were implemented to achive this goal. the perl script phylogenomics_4dtv.pl inferred the phylogeny using four-fold degenerated sites (4DTvs) of combined single copy nuclear genes;

altingia/Barthea_genome_manuscript

pipeline and scripts used in the data analysis of manuscript for genome and population genomics

altingia/Barthea_TE_manuscript

scripts and pipelines for TE analysis

altingia/AutoGPT-Next-Web

🤖 Assemble, configure, and deploy autonomous AI Agents in your browser.一键免费部署你的私人AutoGPT 网页应用

altingia/bsgenova

An accurate, robust, and fast genotype caller for bisulfite-sequencing data

altingia/CEGA

Inferring natural selection by comparative population genomic analysis across species

altingia/ChatGPT-Next-Web

A cross-platform ChatGPT/Gemini UI (Web / PWA / Linux / Win / MacOS). 一键拥有你自己的跨平台 ChatGPT/Gemini 应用。

altingia/chatgpt-web

用 Express 和 Vue3 搭建的 ChatGPT 演示网页

altingia/computel

Compute mean telomere length from Whole Genome Sequencing data.

altingia/dgfr

Analyze Sequence Diversity Of Gene Families

altingia/Fusarium-oxysporum-f.-sp.-cubense----genomics

altingia/GeminiProChat

Minimal web UI for GeminiPro.

altingia/HapHiC

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

altingia/HapSolo

Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding

altingia/HybridExpress

An R package for comparative transcriptomic analyses of hybrids and their progenitors

altingia/HybridMicrobiomeFramework

Data and Code for Camper, Benjamin, et al. "A Conceptual Framework for Host-Associated Microbiomes of Hybrid Organisms." bioRxiv (2023): 2023-05.

altingia/isoseq-pipeline

pipeline for working with PacBio long read RNA data using the outputs of isoseq3

altingia/IsoVis

IsoVis enables fast and informative visualization of isoform structures and expression levels.

altingia/lobe-chat

🤯 Lobe Chat - an open-source, modern-design LLMs/AI chat framework. Supports Multi AI Providers( OpenAI / Claude 3 / Gemini / Perplexity / Bedrock / Azure / Mistral / Ollama ), Multi-Modals (Vision/TTS) and plugin system. One-click FREE deployment of your private ChatGPT chat application.

altingia/mariner

Explore the Hi-Cs

altingia/omdctk

OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.

altingia/Plant-LncRNA-pipline

altingia/Predmoter

Deep Learning application to predict NGS data

altingia/scalepopgen

altingia/selscan

Haplotype based scans for selection

altingia/snipit

snipit: summarise snps relative to your reference sequence

altingia/Tarvense_transposon_dynamics

altingia/Telomere_WGS_qPCR

Script and data for the article: Leveraging whole genome sequencing to estimate telomere length in plants

altingia/TEtrimmer

TE Trimmer: a novel tool to automate manual curation of transposable elements

altingia/trails

Tree reconstruction of ancestry using incomplete lineage sorting

altingia/trails_paper