Pinned Repositories
academics-on-mastodon
A list of various lists consisting of academics on Mastodon
admixcov_data
Variance decomposition analysis of UK and Bohemian human ancient DNA data
admixcov_sims
alxsimon
assembly_10x
Assembly pipeline for 10X chromium genomes of Mytilus species
Chrom-Compare
local_pcangsd
Local PCA with low-coverage data
quarto-pci
A quarto typst template for Peer Community In (PCI)
Scripts
Useful scripts for my PhD
docs.ecoevo.social
ecoevo.social documentation
alxsimon's Repositories
alxsimon/local_pcangsd
Local PCA with low-coverage data
alxsimon/quarto-pci
A quarto typst template for Peer Community In (PCI)
alxsimon/assembly_10x
Assembly pipeline for 10X chromium genomes of Mytilus species
alxsimon/Scripts
Useful scripts for my PhD
alxsimon/academics-on-mastodon
A list of various lists consisting of academics on Mastodon
alxsimon/admixcov_data
Variance decomposition analysis of UK and Bohemian human ancient DNA data
alxsimon/admixcov_sims
alxsimon/alxsimon
alxsimon/Chrom-Compare
alxsimon/demes-rs
rust tools for the demes ecosystem
alxsimon/Hybrid_fitness_Fisher_geometric_model
Source code to simulate Fisher's geometric model for two populations in allopatry, used afterwards to study the fitness of hybrids.
alxsimon/insdc-pipeline
SnakeMake pipeline to run BlobTools on public assemblies
alxsimon/local_pca
Methods for examining PCA locally along the genome.
alxsimon/loomio
Loomio is a collaborative decision making tool
alxsimon/Database_Mytilus
Database of Mytilus sp. genotyping data
alxsimon/egrm_legacy
alxsimon/lostruct-py
alxsimon/ms_myt_demo
Manuscript for a demographic inference project on Mytilus.
alxsimon/Mytilus_ref_genomes_paper
alxsimon/nixpkgs
Nix Packages collection & NixOS
alxsimon/nubeamdedup
Removing PCR duplicates for sequencing reads.
alxsimon/pcangsd
Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
alxsimon/personal_website
Personal website
alxsimon/popgen-notes
Population genetics notes
alxsimon/py-admixcov
Python functions module for the admixture covariance project
alxsimon/pyslim-feedstock
A conda-smithy repository for pyslim.
alxsimon/sgkit-feedstock
A conda-smithy repository for sgkit.
alxsimon/Teaser
A tool to benchmark mappers and different parameters within minutes
alxsimon/tskit
Population-scale genomics
alxsimon/typst-packages
Packages for Typst.