Pinned Repositories
lesionaire
Python library for lesion size analysis and plotting with single cell pathology data.
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
skeleton-tracing
A new algorithm for retrieving topological skeleton as a set of polylines from binary images
UNetPlusPlus
Official Keras Implementation for UNet++ in IEEE Transactions on Medical Imaging and DLMIA 2018
deep-imcyto
Nextflow pipeline for IMC segmentation tasks.
py-imcyto
IMC segmentation in python.
Spatial-PHLEX
Nextflow pipeline for IMC spatial data methods.
TRACERx-PHLEX
Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
TRACERxIMCSpillover
Spillover plugins for TRACERx imaging mass cytometry data analysis, adapted from Chevrier et al 2018.
TYPEx
Deep cell phenoTYPE characterisation using multipleX imaging
amagness's Repositories
amagness/lesionaire
Python library for lesion size analysis and plotting with single cell pathology data.
amagness/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
amagness/skeleton-tracing
A new algorithm for retrieving topological skeleton as a set of polylines from binary images
amagness/UNetPlusPlus
Official Keras Implementation for UNet++ in IEEE Transactions on Medical Imaging and DLMIA 2018