Amaral Lab

Amaral_Lab_Intro_to_Data_Science

Notebooks with lessons for learning Python and its use for Data Science and Scientific Computing applications.

docker4all

fmug

Code to generate the Find My Understudied Genes app for Windows, iOS and macOS platforms.

fmug_analysis

Code to supplement Richardson et al. 2023 "Meta-Research: understudied genes are lost in a leaky pipeline between genome-wide assays and reporting of results".

Introduction-to-Python-Programming-and-Data-Science

Introduction to Python Programming and Data Science

NullSeq

Creates Random Coding Sequences with specified GC content and Amino Acid usage

personality-types

stopwords

synthetic_benchmark_topic_model

transportation_network_evolution

amarallab/Introduction-to-Python-Programming-and-Data-Science

Introduction to Python Programming and Data Science

amarallab/personality-types

amarallab/stopwords

amarallab/transportation_network_evolution

amarallab/NullSeq

Creates Random Coding Sequences with specified GC content and Amino Acid usage

amarallab/Amaral_Lab_Intro_to_Data_Science

Notebooks with lessons for learning Python and its use for Data Science and Scientific Computing applications.

amarallab/docker4all

amarallab/fmug

Code to generate the Find My Understudied Genes app for Windows, iOS and macOS platforms.

amarallab/synthetic_benchmark_topic_model

amarallab/fmug_analysis

Code to supplement Richardson et al. 2023 "Meta-Research: understudied genes are lost in a leaky pipeline between genome-wide assays and reporting of results".

amarallab/questpipe

Submit jobs to Quest MOAB scheduler integrating it in your awesome python code.

amarallab/waldo

Main branch of Waldo repo. Moved from read only bitbuckt repo.

amarallab/cub_benchmarking

amarallab/iCUB

amarallab/NullSeq2.0

Creates Random Coding Sequences with specified GC content, Amino Acid usage, Length, and Codon Utilization

amarallab/gene_bot

A gene-of-the-day bot for Mastodon.

amarallab/US_movies_gender_analysis

Code and data for reproducing results in PLOS One paper: Long-term patterns of gender imbalance in an industry without ability or level of interest differences

amarallab/ards_decision_making

amarallab/benchmarkml

amarallab/Clinical_states

amarallab/FCSDecoder

amarallab/pyCFI

[ABANDONED!] Python-module for inferring cell interfacial tensions from image stacks.

amarallab/reptes

Reptes for Earthtunes and so on

amarallab/sem_images

Code to accompany "Widespread misidentification of SEM instruments in the peer-reviewed materials science and engineering literature".

amarallab/silhouette-extract

amarallab/worksforme

Repeatable Python environments so collaborators never have to say "works for me".