/bio-class-gaa

Repository for building virtual classroom for biology students - Genomics: algorithms and analysis class

Primary LanguageShellOtherNOASSERTION

bio-class-gaa

Dockerfile for building virtual classroom for biology students - Genomics: algorithms and analysis class

Usage

This image is intended for Genomics: algorithms and analysis class tought at Institute of Molecular Genetics of the ASCR, v. v. i.

Software

  • BCFtools
  • BLAST++
  • Bowtie
  • BWA
  • Canu
  • cutadapt
  • FastA
  • FastQC
  • FastX
  • HTSlib
  • Miniasm
  • Minimap2
  • MIRA
  • Racon
  • RStudio Desktop + Server
  • samtools
  • SOAPdenovo2
  • Trimmomatic

Image

RStudio server is started on container start. User can log-in via username: student and password set via PASSWORD container environment variable. To access RStudio server container must bind port 8787.