Pinned Repositories
2018-11-29-Crick-London
Version of Data Carpentry in R Course for CRUK FCI,London
2019-01-15-CRUK-Cambridge-DCinR
Data Carpentry in R course held at School of Clinical Medicine, Cambridge
2020-covid-19-bh
Coordinating the CWL workflow related to the 2020 COVID-19 BioHackathon
adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
ami
ami-jars
point releases of ami executables (normally as maven-appassembler jar-with-dependencies)
arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
archaeopteryx-js
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
IHIW_Management
Management application for IHIW
NGS-SARS-CoV-2
This repository is for comparative and evolutionary analysis of coronaviruses virus.
ambarishK's Repositories
ambarishK/IHIW_Management
Management application for IHIW
ambarishK/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
ambarishK/bh20-seq-resource
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
ambarishK/bh20-workflows-bhxiv
Workflows topic group BioHackathon 2020 mini-publication for https://BioHackrXiv.org
ambarishK/bio-cipres
Phylogenomic analysis on the CIPRES REST portal
ambarishK/bio-cwl-tools
ambarishK/Coding-Lane-Assets
ambarishK/Converters
hml and haml converter repo
ambarishK/coronaobj
ambarishK/covid-gene-expression
Hackathon team: gene expression analysis for Covid-19
ambarishK/cwl-novice-tutorial
ambarishK/cwl-workflow-SARS-CoV-2
CWL workflows related to virus genomics with focus on SARS-CoV-2
ambarishK/DASH10
Data Standards Hackathon 10
ambarishK/DTW_prions
ambarishK/galaxy2cwl
Standalone version tool to get cwl descriptions (initially an abstract cwl interface) of galaxy workflows and Galaxy workflows executions.
ambarishK/GCC-2020
ambarishK/GENIE3
Machine learning-based approach for the inference of gene regulatory networks from expression data.
ambarishK/hml-validation-portal
Portal for HML validation
ambarishK/HW1_DeepLearning
ambarishK/My_HW1_DeepLearning
Test Repo for Deep Learning HW
ambarishK/Neo-antigen-prediction
Computational Prediction of Neoantigens.
ambarishK/NeoPredPipe
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
ambarishK/new_lr
ambarishK/pangolin
Resources for a lineage naming scheme for SARS-CoV-2/hCoV-2019
ambarishK/SARS-CoV-2-gene-analysis
ambarishK/sars-cov-3
SARS-CoV-2 (Severe acute respiratory syndrome coronavirus 2) sequences and features
ambarishK/serratus
Ultra-deep Coronavirus Homology Search
ambarishK/VGpop
Selection scans on VG
ambarishK/viral-analysis
Workflows for viral analysis (as part of COVID-19 Biohackathon)
ambarishK/viralrecon
UNDER CONSTRUCTION: Assembly and intrahost/low-frequency variant calling for viral samples