/Parse_metrics_sh-for-variant-calling-pipeline-gatk4

For those who are looking for a working parse_metrics.sh file in the manual for Variant Calling Pipeline using GATK4 at https://gencore.bio.nyu.edu/variant-calling-pipeline-gatk4/

Primary LanguageShell

Parse_metrics_sh-for-variant-calling-pipeline-gatk4

For those who are looking for a working parse_metrics.sh file in the manual for Variant Calling Pipeline using GATK4 at https://gencore.bio.nyu.edu/variant-calling-pipeline-gatk4/

command to run from terminal:

./parse_metrics.sh sample_id > sample_id_report.csv

Where sample_id is your sample name