/coalseam

Simulating coalescence through population pedigrees

Primary LanguageCGNU General Public License v3.0GPL-3.0

coalseam and pedsim

coalseam generates simulated genetic loci by simulating coalescence through randomly generated population pedigrees. Data are output in a format similar to Hudson's ms program. pedsim simulates pedigrees and outputs various properties of coalescence in the pedigrees, including distributions of pairwise coalescence times and summaries thereof.

Use make to compile the program. (See the Makefile for options.)

See coalped --help and pedsim --help for usage and features.

coalseam is available under the GPLv3 license. See LICENSE.txt for details.