SNAP master build error on Mac OSX

[yakneens]

g++ -O3 -Wno-format -MMD -ISNAPLib -msse -c -o SNAPLib/AlignerContext.o SNAPLib/AlignerContext.cpp
In file included from SNAPLib/AlignerContext.cpp:29:
In file included from SNAPLib/AlignerOptions.h:30:
In file included from SNAPLib/Read.h:30:
In file included from SNAPLib/DataReader.h:26:
In file included from SNAPLib/VariableSizeMap.h:5:
In file included from SNAPLib/VariableSizeVector.h:3:
SNAPLib/Util.h:245:12: warning: absolute value function 'abs' given an argument of type '_int64' (aka 'long long') but has parameter of type 'int' which may cause truncation of
value [-Wabsolute-value]
while (abs(n) >= 10) {
^
SNAPLib/Util.h:245:12: note: use function 'std::abs' instead
while (abs(n) >= 10) {
^~~
std::abs
SNAPLib/Util.h:506:16: warning: '&&' within '||' [-Wlogical-op-parentheses]
return a <= b && a+distance >= b || a >= b && a <= b + distance;
~~~~~~~^~~~~~~~~~~~~~~~~~ ~~
SNAPLib/Util.h:506:16: note: place parentheses around the '&&' expression to silence this warning
return a <= b && a+distance >= b || a >= b && a <= b + distance;
^
( )
SNAPLib/Util.h:506:45: warning: '&&' within '||' [-Wlogical-op-parentheses]
return a <= b && a+distance >= b || a >= b && a <= b + distance;
~~ ~~~~~~~^~~~~~~~~~~~~~~~~~~~
SNAPLib/Util.h:506:45: note: place parentheses around the '&&' expression to silence this warning
return a <= b && a+distance >= b || a >= b && a <= b + distance;
^
( )
In file included from SNAPLib/AlignerContext.cpp:29:
In file included from SNAPLib/AlignerOptions.h:30:
SNAPLib/Read.h:315:31: warning: comparison of array 'other.localBuffer' equal to a null pointer is always false [-Wtautological-pointer-compare]
if (NULL == other.localBuffer || other.data < other.localBuffer || other.data >= other.localBuffer + other.localBufferAllocationOffset - dataLength) {
~~~~ ~~~~~~^~~~~~~~~~~
SNAPLib/Read.h:750:35: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare]
for (i = i - 2; i >=0 && cigarBuffer[i] >= '0' && cigarBuffer[i] <= '9'; i--) {
~ ^ ~
In file included from SNAPLib/AlignerContext.cpp:30:
In file included from SNAPLib/AlignerContext.h:32:
SNAPLib/GenomeIndex.h:193:12: warning: class member cannot be redeclared [-Wredeclared-class-member]
struct OverflowBackpointer;
^
SNAPLib/GenomeIndex.h:119:12: note: previous declaration is here
struct OverflowBackpointer {
^
SNAPLib/AlignerContext.cpp:275:9: warning: delete called on 'ReadWriterSupplier' that is abstract but has non-virtual destructor [-Wdelete-non-virtual-dtor]
delete writerSupplier;
^
SNAPLib/AlignerContext.cpp:341:34: error: expected ')'
FormatUIntWithCommas((unsigned _int64)(1000 * stats->totalReads / max(alignTime, (_int64)1)), readsPerSecond, strBufLen), // Aligntime is in ms
^
SNAPLib/AlignerContext.cpp:341:24: note: to match this '('
FormatUIntWithCommas((unsigned _int64)(1000 * stats->totalReads / max(alignTime, (_int64)1)), readsPerSecond, strBufLen), // Aligntime is in ms
^
7 warnings and 1 error generated.
make: *** [SNAPLib/AlignerContext.o] Error 1

[bolosky]

v1.0 builds and runs on OSX.