Issues
- 2
Add option to add FASTQ comment to SAM output.
#168 opened by ghuls - 0
- 3
Compression of intermediate bam file
#163 opened by matthdsm - 6
Error - Segmentation fault (core dumped)
#151 opened by klamens - 2
SNAP returning different results?
#167 opened by YasirKusay - 0
Feature request: name sort output
#166 opened by matthdsm - 15
Snap crashes during sorting step
#164 opened by matthdsm - 0
mapping HiC read
#165 opened by yangfangyuan0102 - 5
Settings wrt datatype?
#155 opened by matthdsm - 4
- 26
- 2
"snap" binary in Quick Start guide
#156 opened by hubgit - 3
feature request: update @HD to v1.6 specification and add "GO:query" tag for unsorted output
#160 opened by eboyden - 6
- 0
- 0
Feature request: markduplicate metrics and settings
#158 opened by matthdsm - 9
Performance tweaking wrt parallel runs
#157 opened by matthdsm - 3
Indel calling
#154 opened by kokyriakidis - 3
better handling of complex indel situations
#143 opened by bwlang - 1
- 2
Pin a new release
#153 opened by matthdsm - 1
Supplementary mappings
#152 opened by kcleal - 2
Is SNAP effective for high error rate long read data such as Nanopore or others?
#150 opened by jsonProgram - 2
Feature request - accept .fa.gz input files
#132 opened by haiqu - 7
sorting doesn't work with SAM output?
#144 opened by eboyden - 3
- 1
-= doesn't work in SAM
#148 opened by bolosky - 3
- 6
building index
#140 opened by biolxy - 8
Don't require /1 /2 headers
#142 opened by bwlang - 0
- 3
Binary for Linux
#139 opened by ksahlin - 1
sort option -so expected functionality
#117 opened by ramcn - 7
-so option seems to sort in reverse order
#131 opened by haiqu - 2
CPU affinity
#137 opened by jkbonfield - 8
Bad error message for too-long reads
#138 opened by YasirKusay - 12
Sorting error
#136 opened by tylerjkennedy - 9
Running SNAP on macOS
#135 opened by tylerjkennedy - 2
The two FASTQ files are not the same size!
#134 opened by tylerjkennedy - 13
controlling memory usage for sort/index/markdup
#133 opened by teerjk - 5
segfault: OpenMemoryMappedFile datatest/OverflowTable mmap failed: Invalid argument
#129 opened by mr-c - 2
sort issue
#120 opened by jpofmars - 3
High number of duplicates with -so option
#126 opened by carlosmag - 1
- 2
make error
#124 opened by Ckhyriem - 2
Original fastq order
#127 opened by jkbonfield - 10
Low % of properly paired reads
#125 opened by carlosmag - 6
Occur Segmentation fault (core dumped) problem
#123 opened by sjlgg - 4
Truncated output
#121 opened by ParkvilleData - 0
-F option yielding incongruous output
#119 opened by cxr5298