kokyriakidis
Pharmacist thrilled by Bioinformatics.
University of California, Santa CruzSanta Cruz, CA
Pinned Repositories
batchtoolscc
Extension Package for Batchtools. Fine-Tuned for Compute Canada HPC Systems
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcbioSmallRna
R package to analyze data after small RNAseq with bcbio
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
cre
excel report generation using data from bcbio variant2 germline pipeline
dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
GFAse
Tool for globally phasing diploid assembly graphs with orthogonal data
GSOC2020_RNASeq
Selection test for the project named: "Creating a new pipeline for long-read RNA-seq using StringTie v2"
precisionFDAsubmission
GENeTres Submission scripts used in the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions
rnafusion
RNA-seq analysis pipeline for detection gene-fusions
kokyriakidis's Repositories
kokyriakidis/precisionFDAsubmission
GENeTres Submission scripts used in the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions
kokyriakidis/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
kokyriakidis/batchtoolscc
Extension Package for Batchtools. Fine-Tuned for Compute Canada HPC Systems
kokyriakidis/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
kokyriakidis/bcbioSmallRna
R package to analyze data after small RNAseq with bcbio
kokyriakidis/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
kokyriakidis/cre
excel report generation using data from bcbio variant2 germline pipeline
kokyriakidis/dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
kokyriakidis/GFAse
Tool for globally phasing diploid assembly graphs with orthogonal data
kokyriakidis/GSOC2020_RNASeq
Selection test for the project named: "Creating a new pipeline for long-read RNA-seq using StringTie v2"
kokyriakidis/pbRUGD-workflow
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
kokyriakidis/pfb2023
Programming for Biology @ CSHL 2023
kokyriakidis/RNASeq
Pipeline for RNA-Seq PBS script submission in Cluster
kokyriakidis/shasta
De novo assembly from Oxford Nanopore reads.