Pinned Repositories
dysgu
Toolkit for calling structural variants using short or long reads
fnfi
fnfi is a set of tools for aiding split-read alignment and identify structural variants
gw
Genome browser and variant annotation
kmerhash
Convert python string to hashed kmers and back again
pywfa
Python wrapper for wavefront alignment using WFA2-lib
ref_genomes
A collection of reference genomes
RemoveCramTags
Quickly remove tag(s) from SAM/BAM/CRAM files
SV_Benchmark_CMRG
Structural variant benchmark of challenging medically relevant genes
SV_benchmark_PacBio_HiFi
Structural variant benchmark using PacBio HiFi reads
svbench
Benchmark structural variant calls against a reference set
kcleal's Repositories
kcleal/gw
Genome browser and variant annotation
kcleal/dysgu
Toolkit for calling structural variants using short or long reads
kcleal/pywfa
Python wrapper for wavefront alignment using WFA2-lib
kcleal/SV_Benchmark_CMRG
Structural variant benchmark of challenging medically relevant genes
kcleal/svbench
Benchmark structural variant calls against a reference set
kcleal/SV_benchmark_PacBio_HiFi
Structural variant benchmark using PacBio HiFi reads
kcleal/fnfi
fnfi is a set of tools for aiding split-read alignment and identify structural variants
kcleal/kmerhash
Convert python string to hashed kmers and back again
kcleal/RemoveCramTags
Quickly remove tag(s) from SAM/BAM/CRAM files
kcleal/ref_genomes
A collection of reference genomes
kcleal/zights
htslib for the zig build system
kcleal/BadreadAmplicon
a long read simulator that can imitate many types of read problems
kcleal/bioconda-recipes
Conda recipes for the bioconda channel.
kcleal/dodi
kcleal/homebrew-core
🍻 Default formulae for the missing package manager for macOS (or Linux)
kcleal/InSilicoSeqSplit
:rocket: A sequencing simulator
kcleal/physlr
:chains: Construct a Physical Map from Linked Reads
kcleal/homebrew-gw
Feedstock for homebrew tap of GW
kcleal/MINGW-packages
Package scripts for MinGW-w64 targets to build under MSYS2.
kcleal/rare-disease-wf
(WIP) best-practices workflow for rare disease
kcleal/skia_build_arm64
Pre-compiled binaries for Apple M1
kcleal/skia_context_debug
Debug skia gpu context
kcleal/sortedintersect
Fast intersection of sorted reference intervals
kcleal/termux-packages
A package build system for Termux.
kcleal/WFA2-lib
WFA2-lib: Wavefront alignment algorithm library v2