Pinned Repositories
2018_materials
Materials for Neurohackademy 2018 lectures, tutorials, etc.
amrka-stimulation_CA3
Analysis of stimulation experiments in the CA3 region
amrka-stimulation_perforant_pathway
Analysis scripts for perforant stimulation experiments
ANTs
Advanced Normalization Tools (ANTs)
ANTsPy
Advanced Normalization Tools in Python
Autotyping
Automated phenotyping of mouse behavior
Diffusion_Analysis_All_Scripts
These are the scripts I used to analyze d-MRI data acquired in oct_2017
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
nipype
Workflows and interfaces for neuroimaging packages
Tracking_DeepLabCut
Tracking of mice in novel object recognition
amrka's Repositories
amrka/Tracking_DeepLabCut
Tracking of mice in novel object recognition
amrka/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
amrka/Diffusion_Analysis_All_Scripts
These are the scripts I used to analyze d-MRI data acquired in oct_2017
amrka/amrka-stimulation_CA3
Analysis of stimulation experiments in the CA3 region
amrka/amrka-stimulation_perforant_pathway
Analysis scripts for perforant stimulation experiments
amrka/banana
Biomedical ANAlysis iN Arcana (Banana): biomedical analysis workflows implemented in the Arcana framework
amrka/Behavior_OF_EPM
amrka/bids_tools
scripts to organize 9.4T data and videos into BIDS format
amrka/Bru2Nii
Bruker ParaVision to NIfTI conversion
amrka/CitaAutoComplete
Auto-complete the сita receiving form on site https://sede.administracionespublicas.gob.es/ for fingerprinting.
amrka/dataset-examples
Samples for users of the Yelp Academic Dataset
amrka/Diffusion_MRI_Analysis
amrka/fmriflows
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
amrka/heudiconv
A flexible DICOM converter for organizing brain imaging data into structured directory layouts/ modifications for bruker
amrka/john-repo
another git tutorial repo
amrka/kevin_rs-fMRI
Analysis of the resting-state data before and after photo stimulation
amrka/MGT_ds000005
replication of mixed_gambling task https://openneuro.org/datasets/ds000005
amrka/my-git-repo
git tutorial repo
amrka/NARPS_Q58J
amrka/nilearn_tutorials
Jupyter notebooks of the official nilearn tutorials
amrka/pubmed_scrape_dw-MRI_preclinical
The code used to scrape the pubmed in order to get the articles used in the review
amrka/pyforest
Lazy-import of all popular Python Data Science libraries
amrka/Python_ST7735
Python library to control an ST7735 TFT LCD display. Allows simple drawing on the display without installing a kernel module.
amrka/RABIES
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/en/stable/
amrka/RS_fMRI_Mice
amrka/SAMRI
Small Animal Magnetic Resonance Imaging via Python.
amrka/ST7735_TFT_RPI
Library for TFT SPI LCD, ST7735 Driver, Raspberry Pi C++.
amrka/stimulation_CA3
Analysis scripts for CA stimulation using (5Hz, 10Hz, 20Hz and 40Hz)
amrka/stimulation_perforant_pathway
scripts to process stimulation experiments to the perforant pathway using 10Hz, 20 Hz and 40Hz
amrka/VBM_Mice
Analysis scripts for the 3D images acquired in October 2017